SmileSherlock
A high-performance, production-grade tool for SMILES validation, PubChem lookups, and chemical structure retrieval
What XERJ indexed
Snapshot
The whole repository at commit 7675490055. It is the newest commit on main.
Selected work
Licence
The repository
LICENSE file checked at the pinned commit; the author agreed to inclusion.
The XERJ corpus
The owner added it on hub.xerj.org after signing in with GitHub, on 2026-10-28. Same terms as the repository. Answers name the repo, the commit and the file:line.
selected for the XERJ Corpus Hublicence clearedsuggested use: adapt with attribution
bioinformaticscheminformaticschemistrychemoinformaticsclicomputational-chemistrymetabolitespubchem
Example questions
- How does SmileSherlock implement bioinformatics?
- Show the cheminformatics code in SmileSherlock.
Inside the indexed corpus
- 59 files, 1.3 MB in total, about 22.0 KB per file.
- On GitHub since 2026-08-02, last push 2026-08-27, 76 commits on main.
Licence on GitHub and in the corpus
GitHub reported MIT for AtharvaTilewale/SmileSherlock on 2026-10-31, and the LICENSE file at commit 7675490055 was reviewed as MIT. They match, so answers from this corpus carry the same terms as the live repository.
Contributors
Atharva Tilewale (@AtharvaTilewale) has 6 selected repositories on the hub.
Their other repository pages: AtharvaTilewale/boltz2-notebook, AtharvaTilewale/ChemLitmus, AtharvaTilewale/ConformAtlas, AtharvaTilewale/FELBuilder, AtharvaTilewale/meowmd.
Using XERJ with SmileSherlock
- Search an OpenAPI spec so an agent can find endpoints The hub files it under API design and specification.
- Ask questions about a GitHub repo without cloning it
- Index a reference library for a coding agent
- ripgrep vs a code index for coding agents: 30 tasks
The prompt
Paste it into your AI agent. It clones AtharvaTilewale/SmileSherlock at the pinned commit and indexes it on your machine.
Search the GitHub repository AtharvaTilewale/SmileSherlock with XERJ (https://hub.xerj.org/corpus/atharvatilewale--smilesherlock). Run these in a shell, in order, and check each result before the next: 1. xerj --help (success: it prints usage). If xerj is missing: curl -fsSL https://xerj.org/get | sh 2. git clone https://github.com/AtharvaTilewale/SmileSherlock SmileSherlock && git -C SmileSherlock checkout 7675490055f083b292f25cb7b1aaea0e5be50c7d 3. Start a local node and leave it running: xerj --insecure --data-dir ./xerj-data 4. xerj autoindex ./SmileSherlock --url http://127.0.0.1:9200 --prefix smilesherlock --progress plain 5. xerj autoindex map --url http://127.0.0.1:9200 Then answer my question from the indexed files and cite the ax_path of every hit. Query syntax: https://xerj.org/llms.txt Licence: MIT. Keep the copyright notice and credit the authors.
Related
Atharva TilewaleAPI design and specification corporaaidertexiosimonw-llmAtharvaTilewale/ChemLitmusjigonzalez930209/sci-formasifverse4/100-days-of-computational-chemistry
Stats: GitHub API, fetched 2026-10-31. Snapshot: the git tree at the pinned commit. Selected work and consent: the XERJ registry.