Atharva Tilewale
Atharva Tilewale's work was selected for the XERJ Corpus Hub, the open reference memory AI coding agents search before they write code. When an agent meets the same problem, it gets this implementation back as a worked example, with the author and the repository attached.
Totals across every corpus @AtharvaTilewale appears in; a commit selected for two corpora counts once. Files and lines count the selected commits; each corpus indexes the whole repository at its pinned commit.
What an agent can do with the boltz2-notebook corpus
AtharvaTilewale/boltz2-notebook: Boltz2 Notebook: A streamlined Colab-based pipeline for protein structure prediction and binding affinity analysis using the Boltz2 deep…
- Look up how boltz2-notebook implements binding-affinity, bioinformatics, bioinformatics-tool, with answers cited to file and line.
- Reuse a worked example: the commit “Polish README and notebook headers; usage reports on by default; cite…” (9 files · Python).
- Answer from boltz2-notebook's real Python source instead of memory (Health and clinical reference).
- How does boltz2-notebook implement binding-affinity?
- What does tools do in boltz2-notebook?
Search the GitHub repository AtharvaTilewale/boltz2-notebook with XERJ (https://hub.xerj.org/corpus/atharvatilewale--boltz2-notebook). Run these in a shell, in order, and check each result before the next: 1. xerj --help (success: it prints usage). If xerj is missing: curl -fsSL https://xerj.org/get | sh 2. git clone https://github.com/AtharvaTilewale/boltz2-notebook boltz2-notebook && git -C boltz2-notebook checkout 8dff4bc91087ef9731cba45036d85794bd9ca1e5 3. Start a local node and leave it running: xerj --insecure --data-dir ./xerj-data 4. xerj autoindex ./boltz2-notebook --url http://127.0.0.1:9200 --prefix boltz2-notebook --progress plain 5. xerj autoindex map --url http://127.0.0.1:9200 Then answer my question from the indexed files and cite the ax_path of every hit. Query syntax: https://xerj.org/llms.txt Licence: MIT. Keep the copyright notice and credit the authors.
corpus atharvatilewale--boltz2-notebook · Health and clinical reference
Related corpora: scispacy, camel, MuteJester/GenAIRR, scikit-bio/scikit-bio
Case study: reference coding for agents
Selected work
AtharvaTilewale/boltz2-notebook
Boltz2 Notebook, A streamlined Colab-based pipeline for protein structure prediction and binding affinity analysis using the Boltz2 deep learning model
The corpus is the whole repository at the pinned commit, not only the files of the selected commit.
AtharvaTilewale/ChemLitmus
SMILES validation and diagnosis, molecular identity, SMARTS auditing, and multi-database compound lookup (PubChem, ChEMBL, ChEBI, KEGG)
The corpus is the whole repository at the pinned commit, not only the files of the selected commit.
AtharvaTilewale/ConformAtlas
Mapping conformational landscapes from molecular simulations. Free-energy landscapes with bootstrap uncertainty, metastable states, barriers and kinetics from MD trajectories: PCA, TICA, Markov state models, convergence diagnostics and multi-system comparison. Python package and CLI
The corpus is the whole repository at the pinned commit, not only the files of the selected commit.
AtharvaTilewale/FELBuilder
FELBuilder is an automated Python pipeline that automates the complex workflow of Principal Component Analysis (PCA) and Free Energy Landscape (FEL) analysis from Molecular Dynamics (MD) trajectories
The corpus is the whole repository at the pinned commit, not only the files of the selected commit.
AtharvaTilewale/meowmd
MeowMD, The Purrfect Markdown Workspace
The corpus is the whole repository at the pinned commit, not only the files of the selected commit.
AtharvaTilewale/SmileSherlock
A high-performance, production-grade tool for SMILES validation, PubChem lookups, and chemical structure retrieval
The corpus is the whole repository at the pinned commit, not only the files of the selected commit.
Sign in with GitHub or Hugging Face to see more: every selected commit in full (commit date, every folder, licence review state, pin) and the pack builds of each corpus.
[](https://hub.xerj.org/contributors/AtharvaTilewale)
Included with the author's permission (email, 2026-10-28), under each repository's own licence, with attribution. Own more repositories? Sign in with GitHub and add them. Want something removed? Reply to the email, withdraw it on /add, or open an issue on xerj-org/xerj.