nanopore-HMM
MATLAB code package HMM inference, specifically tailored to nanopore ionic current flow data
A new way for AI to search for data
1GitHub stars
What XERJ indexed
Selected work
“Fix ADP fitting (M -> ADP rename), select ATP/AMP model variant by se…”. 21 files, 1,751 lines in ATP_AMP, ADP, the project root.
Licence
The repository
MIT
Checked by a person at the pinned commit.
The XERJ corpus
MIT, with credit
The author agreed by email on 2026-10-23. Same terms as the repository. Answers name the repo, the commit and the file:line.
in licence reviewnot in the hub yetsuggested use: adapt with attribution
Example questions
- What does ATP_AMP do in nanopore-HMM?
The prompt
Paste it into your AI agent. It clones yulanvanoppen/nanopore-HMM at the pinned commit and indexes it on your machine.
Search the GitHub repository yulanvanoppen/nanopore-HMM with XERJ (https://hub.xerj.org/corpus/yulanvanoppen--nanopore-hmm). Run these in a shell, in order, and check each result before the next: 1. xerj --help (success: it prints usage). If xerj is missing: curl -fsSL https://xerj.org/get | sh 2. git clone https://github.com/yulanvanoppen/nanopore-HMM nanopore-HMM && git -C nanopore-HMM checkout 25bd84e25ef67e67f671785d4f975838d69ef36b 3. Start a local node and leave it running: xerj --insecure --data-dir ./xerj-data 4. xerj autoindex ./nanopore-HMM --url http://127.0.0.1:9200 --prefix nanopore-hmm --progress plain 5. xerj autoindex map --url http://127.0.0.1:9200 Then answer my question from the indexed files and cite the ax_path of every hit. Query syntax: https://xerj.org/llms.txt Licence: MIT. Keep the copyright notice and credit the authors.
Related
Yulan van OppenAI, prompts and agents corporapwr-control/libraryMagnumOpusLLC/SALT-corebla1r1/iTgLegacy
Selected work and consent: the XERJ registry.