mtl-bioinformatics-ner
reference corpus · status live · domain HEALTH (Health and clinical reference) · lane A · refresh pinned · tags GLOBAL · BIOMEDICAL-NER · CONLL · BC5CDR · NCBI-DISEASE
What an agent uses it for
An agent training biomedical named-entity recognition queries this for a bundle of CoNLL-format corpora (NCBI-Disease, BC5CDR, BioNLP, JNLPBA, Linnaeus, Species-800).
curl -fsSLO https://raw.githubusercontent.com/xerj-org/xerj/corpus-hub/tools/xerj-code/hub/mtl-bioinformatics-ner.jsonxerj corpus add --from ./mtl-bioinformatics-ner.jsonxerj corpus index mtl-bioinformatics-ner then xerj code mtl-bioinformatics-ner "your question"Needs the xerj CLI and a local node running; the copy prompt covers both, checks each step, and shows how to stop only the node you started. No shell: the MCP tool xerj_code_search with corpus: "mtl-bioinformatics-ner", once the corpus is indexed on the node.
Sources and pins
| source | pin | licence | size | review note |
|---|---|---|---|---|
| MTL-Bioinformatics-2016 | df0df02fae6d | CC-BY-4.0 | 212.2 MB / 243 files | licence host-verified (ok-spdx): CC-BY-4.0 |
212.2 MB across 243 files. Added 2026-10-13.
Rights
CC-BY-4.0. Redistribution permitted with attribution per the licence review. The review block records a human opening each licence file at the pin. Detector output is a hint, never the verdict.
Retrieval spot-check (G7)
Not yet spot-checked. Queries are pre-registered in the registry before grading.