vigeas

VIral GEnome ASsembly pipelines for WGS

A new way for AI to search for data

View on GitHub

5GitHub stars

What XERJ indexed

Snapshot

Whole repository

The whole repository at commit 0cffe04220 (2026-10-17).

Selected work

Laise de Moraes
@lpmor22

“v2026.10.17”. 15 files, 784 lines in refseq, blastdb, scripts.

Licence

The repository

MIT

Checked by a person at the pinned commit.

The XERJ corpus

MIT, with credit

The author agreed by email on 2026-10-19. Same terms as the repository. Answers name the repo, the commit and the file:line.

in licence reviewnot in the hub yetsuggested use: adapt with attribution

illuminaviral-genomicswhole-genome-sequencingnanopore

Example questions

How does vigeas implement illumina?
Where does vigeas handle “v2026.10.17”?
What does refseq do in vigeas?

The prompt

Paste it into your AI agent. It clones khourious/vigeas at the pinned commit and indexes it on your machine.

Search the GitHub repository khourious/vigeas with XERJ (https://hub.xerj.org/corpus/khourious--vigeas).
Run these in a shell, in order, and check each result before the next:
1. xerj --help  (success: it prints usage). If xerj is missing: curl -fsSL https://xerj.org/get | sh
2. git clone https://github.com/khourious/vigeas vigeas && git -C vigeas checkout 0cffe0422063ce750ce16d4d8b83e0df227e6823
3. Start a local node and leave it running: xerj --insecure --data-dir ./xerj-data
4. xerj autoindex ./vigeas --url http://127.0.0.1:9200 --prefix vigeas --progress plain
5. xerj autoindex map --url http://127.0.0.1:9200
Then answer my question from the indexed files and cite the ax_path of every hit. Query syntax: https://xerj.org/llms.txt
Licence: MIT. Keep the copyright notice and credit the authors.

Laise de Moraes Health and clinical reference corpora

Selected work and consent: the XERJ registry.