hamid13r /
tomo_toolshed
A small, growing collection of lightweight cryo-ET file/CLI tools focused on the WarpTools pipeline
A new way for AI to search for data
2GitHub stars
What XERJ indexed
Selected work
“skipped-views: diagnosis table of kept/removed views per log, XML and…”. 3 files, 378 lines in src/tomo_toolshed, tests.
Licence
The repository
MIT
Checked by a person at the pinned commit.
The XERJ corpus
MIT, with credit
The author agreed by email on 2026-10-22. Same terms as the repository. Answers name the repo, the commit and the file:line.
in licence reviewnot in the hub yetsuggested use: adapt with attribution
cryoetwarp
Example questions
- How does tomo_toolshed implement cryoet?
- What does src/tomo_toolshed do in tomo_toolshed?
- Show the warp code in tomo_toolshed.
The prompt
Paste it into your AI agent. It clones hamid13r/tomo_toolshed at the pinned commit and indexes it on your machine.
Search the GitHub repository hamid13r/tomo_toolshed with XERJ (https://hub.xerj.org/corpus/hamid13r--tomo-toolshed). Run these in a shell, in order, and check each result before the next: 1. xerj --help (success: it prints usage). If xerj is missing: curl -fsSL https://xerj.org/get | sh 2. git clone https://github.com/hamid13r/tomo_toolshed tomo_toolshed && git -C tomo_toolshed checkout b3227ce492e8cc8933fd9e239b9707eeb04c4361 3. Start a local node and leave it running: xerj --insecure --data-dir ./xerj-data 4. xerj autoindex ./tomo_toolshed --url http://127.0.0.1:9200 --prefix tomo-toolshed --progress plain 5. xerj autoindex map --url http://127.0.0.1:9200 Then answer my question from the indexed files and cite the ax_path of every hit. Query syntax: https://xerj.org/llms.txt Licence: MIT. Keep the copyright notice and credit the authors.
Related
Hamid RahmaniAPI design and specification corpora
Selected work and consent: the XERJ registry.