pridemap

Find the right PRIDE proteomics dataset: LLM-tagged, filterable, explained

A new way for AI to search for data

View on GitHub

3GitHub stars

Python, C#

What XERJ indexed

Snapshot

Whole repository

The whole repository at commit e6c0b98503 (2026-10-18).

Selected work

mani
@neomatrix369

“pin the MaxQuant config invariants that only fail mid-run”. 3 files, 536 lines in tests, tools.

Licence

The repository

MIT

Checked by a person at the pinned commit.

The XERJ corpus

MIT, with credit

The author agreed by email on 2026-10-19. Same terms as the repository. Answers name the repo, the commit and the file:line.

in licence reviewnot in the hub yetsuggested use: adapt with attribution

Example questions

Where does pridemap handle “pin the MaxQuant config invariants that only fail mid-run”?
What does tools do in pridemap?

The prompt

Paste it into your AI agent. It clones FlynnLachendro/pridemap at the pinned commit and indexes it on your machine.

Search the GitHub repository FlynnLachendro/pridemap with XERJ (https://hub.xerj.org/corpus/flynnlachendro--pridemap).
Run these in a shell, in order, and check each result before the next:
1. xerj --help  (success: it prints usage). If xerj is missing: curl -fsSL https://xerj.org/get | sh
2. git clone https://github.com/FlynnLachendro/pridemap pridemap && git -C pridemap checkout e6c0b9850334801d520003c50ee3374f355586c3
3. Start a local node and leave it running: xerj --insecure --data-dir ./xerj-data
4. xerj autoindex ./pridemap --url http://127.0.0.1:9200 --prefix pridemap --progress plain
5. xerj autoindex map --url http://127.0.0.1:9200
Then answer my question from the indexed files and cite the ax_path of every hit. Query syntax: https://xerj.org/llms.txt
Licence: MIT. Keep the copyright notice and credit the authors.

mani AI, prompts and agents corpora

Selected work and consent: the XERJ registry.