StromatoliteGrowth
Exploring stromatolite formation through computational growth: process-based models of microbial growth, sediment deposition, environmental forcing and layered structure
What XERJ indexed
Snapshot
The whole repository at commit 099357c1aa. It is the newest commit on main.
Selected work
Licence
The repository
LICENSE file checked at the pinned commit; the author agreed to inclusion.
The XERJ corpus
The owner added it on hub.xerj.org after signing in with GitHub, on 2026-10-31. Same terms as the repository. Answers name the repo, the commit and the file:line.
selected for the XERJ Corpus Hublicence clearedsuggested use: adapt with attribution
growthnatural-historyscientific-visualizationstromatolitestromatolitescomputational-biologymathematical-modellingpaleobiology
Example questions
- How does StromatoliteGrowth implement growth?
- Show the natural-history code in StromatoliteGrowth.
Inside the indexed corpus
- 73 files, 126.1 MB in total, about 1.7 MB per file.
- Languages by size: HTML 98.4%, Jupyter Notebook 1.4%, Python 0.2%, Shell 0%.
- On GitHub since 2026-06-25, last push 2026-07-02, 35 commits on main.
Licence on GitHub and in the corpus
GitHub reported MIT for davewalker5/StromatoliteGrowth on 2026-10-31, and the LICENSE file at commit 099357c1aa was reviewed as MIT. They match, so answers from this corpus carry the same terms as the live repository.
Contributors
Dave Walker (@davewalker5) has 14 selected repositories on the hub.
Their other repository pages: davewalker5/ADS-B-BaseStationReader, davewalker5/FossilTracker, davewalker5/ChromatophoreSimulator, davewalker5/OctopusController, davewalker5/FishTrack, davewalker5/LogSpiral.
Using XERJ with StromatoliteGrowth
- Search Jupyter notebooks (.ipynb) and the .py beside them Jupyter Notebook is 1.4% of the code by size.
- Index a reference library for a coding agent
- ripgrep vs a code index for coding agents: 30 tasks
- Best MCP servers for local code search in 2026, compared
The prompt
Paste it into your AI agent. It clones davewalker5/StromatoliteGrowth at the pinned commit and indexes it on your machine.
Search the GitHub repository davewalker5/StromatoliteGrowth with XERJ (https://hub.xerj.org/corpus/davewalker5--stromatolitegrowth). Run these in a shell, in order, and check each result before the next: 1. xerj --help (success: it prints usage). If xerj is missing: curl -fsSL https://xerj.org/get | sh 2. git clone https://github.com/davewalker5/StromatoliteGrowth StromatoliteGrowth && git -C StromatoliteGrowth checkout 099357c1aaf550a4ae83da8f90143c3e33a177fa 3. Start a local node and leave it running: xerj --insecure --data-dir ./xerj-data 4. xerj autoindex ./StromatoliteGrowth --url http://127.0.0.1:9200 --prefix stromatolitegrowth --progress plain 5. xerj autoindex map --url http://127.0.0.1:9200 Then answer my question from the indexed files and cite the ax_path of every hit. Query syntax: https://xerj.org/llms.txt Licence: MIT. Keep the copyright notice and credit the authors.
Related
Dave WalkerHealth and clinical reference corporasyntheaplan-and-actdavewalker5/LogSpiraldavewalker5/OctopusControllerdavewalker5/ChromatophoreSimulator
Stats: GitHub API, fetched 2026-10-31. Snapshot: the git tree at the pinned commit. Selected work and consent: the XERJ registry.